Note: There is no official commentary in this work about the music used in it.
- Title Screen theme
- 君はあの影を見たか？
- Did You See that Shadow? [1]
- VS Select theme
- 萃夢想
- Memory of Forgathering Dream
- Pre-Battle
- 伝説の巨神
- The Legendary Titan [2]
- Pre-Battle
- ぼくらの非想天則
- Our Hisou Tensoku [3]
- Pre-Battle
- 人形のある風景
- The Scenery of Living Dolls
- Staff Roll theme
- 悠久の蒸気機関
- The Eternal Steam Engine
- Sanae Kochiya's theme / Moriya Shrine
- 信仰は儚き人間の為に
- Faith Is for the Transient People
- Cirno's theme / Around the Lake of Fog
- おてんば恋娘
- Beloved Tomboyish Girl
- Hong Meiling's theme / The Geyser Underground Center Entrance
- 上海紅茶館 ～ Chinese Tea
- Shanghai Teahouse ~ Chinese Tea
- Utsuho Reiuji's theme / The Geyser Underground Center Passageway
- 霊知の太陽信仰 ～ Nuclear Fusion
- Solar Sect of Mystic Wisdom ~ Nuclear Fusion
- Suwako Moriya's theme
- 明日ハレの日、ケの昨日
- Tomorrow Will Be Special, Yesterday Was Not
- Last Boss theme, Nuclear Reactor Fusion Core
- アンノウンＸ ～ Unfound Adventure
- Unknown X ~ Unfound Adventure
- Sanae vs Suwako
- 空に浮かぶ物体Ｘ
- X, the Floating Objects in the Sky
- Hakurei Reimu's theme / Pristine Hakurei Shrine
- 二色蓮花蝶 ～ Ancients
- Dichromatic Lotus Butterfly ~ Ancients
- Marisa Kirisame's theme /
- 恋色マジック
- Love-Colored Magic
- Alice Margatroid's theme /
- the Grimoire of Alice
- the Grimoire of Alice
- Patchouli Knowledge's theme /
- ヴワル魔法図書館
- Voile, the Magic Library
- (UNLISTED IN MUSIC ROOM) Reimu performing the Spell Card "Fantasy Heaven" during Round 3 is an instakill and a possible homage to the FATAL K.O.s of a Hokuto no Ken fighting game. An example of the Reimu's instakill can be seen here.
- Oriental Love Consultation is remixed to resemble "Ai wo Torimodose" (Bring Back Love), the first opening theme to Hokuto no Ken, a sort of "I Will Take Back My Oriental Love Consultation". Another proposed name for this song is "Mystic Oriental Love Consultation (End of Century version)".
- Title Screen old theme
- 緋想天
- Sky of Scarlet Perception
- Pre-Battle
- 日常坐臥
- Usual Days
- Ruined Hakurei Shrine theme
- 地の色は黄色
- The Ground's Color Is Yellow
- Pre-Battle
- 甲論乙駁
- Argue for and Against
- Pre-Battle (old)
- 風光明媚
- Beautiful Nature Sight
- Forest of Magic theme
- 香る樹葉花
- Fragrant Plants
- Creek of Genbu theme
- 踊る水飛沫
- Dancing Water Spray
- Pre-Battle
- 以魚駆蠅
- Swing a Fish to Drive Away Flies
- Pre-Battle (old)
- 放縦不羈
- Free and Easy
- Youkai Mountain theme
- 嘲りの遊戯
- Ridiculous Game
- Pre-Battle
- 冷吟閑酔
- Drunk as I Like
- Pre-Battle (old)
- 雲外蒼天
- Skies Beyond the Clouds
- Iku Nagae's theme / Mysterious Sea of Clouds theme
- 黒い海に紅く ～ Legendary Fish
- Crimson in the Black Sea ~ Legendary Fish
- Pre-Battle (old)
- 天衣無縫
- Flawless Clothing of the Celestials
- Tenshi Hinanawi's theme / Bhava-Agra theme
- 有頂天変 ～ Wonderful Heaven
- Catastrophe in Bhava-agra ~ Wonderful Heaven
- Tenshi Hinanawi´s final spell (Unused)
- 幼心地の有頂天
- Bhava-agra as Seen Through a Child's Mind
- Ending old theme
- 暮色蒼然
- Darkening Dusk
- Staff Roll old theme
- 東方緋想天
- Oriental Sky of Scarlet Perception
- Hakurei Reimu's theme / Pristine Hakurei Shrine old theme
- 東方妖恋談
- Mystic Oriental Love Consultation
- Marisa Kirisame's theme / Forest of Magic, Kirisame Magic Shop old theme
- 星の器 ～ Casket of Star
- Vessel of Stars ~ Casket of Star
- Sakuya Izayoi's theme / Scarlet Devil Mansion Clock Tower theme
- フラワリングナイト
- Flowering Night
- Alice Margatroid's theme / Forest of Magic, Forest of Dolls old theme
- ブクレシュティの人形師
- The Doll Maker of Bucuresti
- Youmu Konpaku's theme / Netherworld theme
- 広有射怪鳥事 ～ Till When？
- Hiroari Shoots a Strange Bird ~ Till When?
- Patchouli Knowledge's theme / Scarlet Devil Mansion Library old theme
- ラクトガール ～ 少女密室
- Locked Girl ~ Girl's Secret Room
- Yuyuko Saigyouji's theme / Snowy Garden of Hakugyokurou theme
- 幽雅に咲かせ、墨染の桜 ～ Border of Life
- Bloom Nobly, Cherry Blossoms of Sumizome ~ Border of Life
- Remilia Scarlet's theme / Scarlet Devil Mansion Foyer
- 亡き王女の為のセプテット
- Septette for the Dead Princess
- Yukari Yakumo's theme / Forest of Magic alternate old theme
- 夜が降りてくる
- Night Falls ~ Evening Star
- Suika Ibuki's theme / Ruined Hakurei Shrine alternate old theme
- 砕月
- Broken Moon
- Reisen Udongein Inaba's theme / Bamboo Forest of the Lost theme
- 狂気の瞳 ～ Invisible Full Moon
- Lunatic Eyes ~ Invisible Full Moon
- Aya Shameimaru's theme / Youkai Mountain alternate old theme
- 風神少女
- Wind God Girl
- Komachi Onozuka's theme / Creek of Genbu alternate old theme
- 彼岸帰航 ～ Riverside View
- Higan Retour ~ Riverside View
^ "Did you XXX YYY?" (Kimi wa XXX wo YYY-ta ka?) and "Our ZZZ" (Boku-ra no ZZZ) are well-used phrases in old-school giant robot manga or hot-blooded anime. Good examples include "Have You Ever Felt Your Cosmo?" (Kimi wa Kosumo wo kanjita koto ga aru ka?) from Saint Seiya and "Our Mazinger Z" (Bokura no Mazinger Z), the ending theme of Mazinger Z.
^ The name the Legendary Titan (Densetsu no Kyoshin) is a parody of Densetsu Kyojin Ideon. 巨神 is a portmanteau of 巨人 (titan) and 神 (god), intended to mean "an incredibly giant robot with great, god-like power".
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